HsaEX0059534 @ hg19
Exon Skipping
Gene
ENSG00000169507 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:26836]
Coordinates
chr2:165765150-165768258:-
Coord C1 exon
chr2:165768146-165768258
Coord A exon
chr2:165766103-165766206
Coord C2 exon
chr2:165765150-165765281
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTTATCCTCCATAGGTA
3' ss Score
11.61
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGGACTTATTTGAAAATTACTGCAGAAATGATGACCTGGTAACATTTGGAAGATTTTGTTATGGTGTCACTGTCATTTTGACATACCCTATGGAATGCTTTGTGACAAGAGAG
Seq A exon
GTATTGTTCCTGTTATTACCTCTTTGCTCTTTTTCACGCTCTTGTCTCAGCCTATAATTCTGCTCCAAATCCTGTGCATGTTTCAAGCCCTACCTCAAACCAAG
Seq C2 exon
GTAATTGCCAATGTGTTTTTTGGTGGGAATCTTTCATCGGTTTTCCACATTGTTGTAACAGTGATGGTCATCACTGTAGCCACGCTTGTGTCATTGCTGATTGATTGCCTCGGGATAGTTCTAGAACTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169507-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(10.8=100)
A:
PF0149013=Aa_trans=PD(2.8=36.8)
C2:
PF0149013=Aa_trans=FE(12.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTTATTTGAAAATTACTGCAGA
R:
AGAACTATCCCGAGGCAATCA
Band lengths:
235-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)