HsaEX0059820 @ hg19
Exon Skipping
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:HGNC Symbol;Acc:18168]
Coordinates
chr2:74542072-74561304:-
Coord C1 exon
chr2:74561154-74561304
Coord A exon
chr2:74555247-74555313
Coord C2 exon
chr2:74542072-74542152
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTTGCCACCCAACAGGAA
3' ss Score
8.56
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGTGCTGACACCATCACAGTATGTTCCCTTCTCAACCCTGGACATGGTTCAGAAACAGCTAAAGCAGACAAGAATCTGGGGCAGCCAATATTGTACCACCTGCCAAAGCTTGGCACAAACAATCTGGAAGCCAAAAATTGCACATACTGTG
Seq A exon
GAACAGAGCAAGTGGTTCTGGCCTCCCTGGGATTTGGATCCTGGTTTCCAGAGCTAAGAACACAAAG
Seq C2 exon
TCATGAAGGTGAAGGAGGAGAAGGCTGGGGTAGGAAAGCTGGACCACACTAACCACAGGAGGAGATTTCCGGATCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687-'3-9,'3-7,4-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCCTTCTCAACCCTGGA
R:
TTTCCTACCCCAGCCTTCTCC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)