HsaEX0060951 @ hg19
Exon Skipping
Gene
ENSG00000165643 | SOHLH1
Description
spermatogenesis and oogenesis specific basic helix-loop-helix 1 [Source:HGNC Symbol;Acc:27845]
Coordinates
chr9:138585257-138586303:-
Coord C1 exon
chr9:138586233-138586303
Coord A exon
chr9:138585816-138585881
Coord C2 exon
chr9:138585257-138585660
Length
66 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTCCATTCCATTTAGGAT
3' ss Score
10.35
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTCTGCGTTGGGGTCTGATGTGGACGATGGGACGTCCTTCCTGCTGACTGCTGGTCCCAGCTCGTGGCCGG
Seq A exon
GATTTAGTGTTTGGGAGCCCGTTCCTGGTTCTGGTCCAACAGGTGTCCTGGGTCTGGGGCCACCAG
Seq C2 exon
GGTCTCTGGAGGGTCGAGGAGGCAGTGGCCCTGCATGGGCCCCAGCTGAGAGCAGTCCACTGGATGTTGGAGAGCCAGGCTTCCTAGGGGACCCTGAGCTTGGCTCCCAGGAGCTCCAGGACAGCCCTCTGGAGCCGTGGGGCCTGGATGTGGACTGTGCAGGCCTGGCCCTGAAGGACGAGGTGGAGAGCATCTTCCCTGACTTCTTTGCCTGCTAGCAGCCAGGCTGTGGAGAGGAGGCGGGCGGGGCCGGTGGATCTGGAGCCGTGTGTGTCCCTGTCGCGTGCTTGGGCATTTTATTTTGGGTTTGGGTTGCAGCTGCACCCTAATTTGAGCGAGGCTTACAGGCTGTGAGAAGAGGATAGTGAATATTAAAGAGGGAAAGCAGTTTTCCTGGAGGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165643_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=0.826 C2=0.653
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGGTCTGATGTGGACGAT
R:
CCAAGCTCAGGGTCCCCTAG
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)