HsaEX0061121 @ hg19
Exon Skipping
Gene
ENSG00000167182 | SP2
Description
Sp2 transcription factor [Source:HGNC Symbol;Acc:11207]
Coordinates
chr17:45973516-45992754:+
Coord C1 exon
chr17:45973516-45973659
Coord A exon
chr17:45987030-45987096
Coord C2 exon
chr17:45992678-45992754
Length
67 bp
Sequences
Splice sites
3' ss Seq
ACATTACCTTTGTTTTACAGAGG
3' ss Score
8.28
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
AATGTTCCAAGCGCTTATTGGTGAAGGCTGCCGTCGCTCGGGCGGTGGCGGGCTCCGGGATTGGCGGTTGCTTGGCGGGCGGTGTCAGGCTCTCGGTGGCGGCGGAGGCGGCGGAGGCCAGGGAGGAAGATGTCGTAATGAGCG
Seq A exon
AGGGCACTAGGAGGAGGCTAAGAGGGACCATCCCACTAATGAACCACACAGTCAGAATCTCATTTAG
Seq C2 exon
ATCCACAGACCAGCATGGCTGCCACTGCTGCTGTGAGTCCCAGTGACTACCTGCAGCCTGCCGCCTCCACCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167182_MULTIEX1-2/5=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.739 C2=0.613
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTATTGGTGAAGGCTGCCGT
R:
GTCACTGGGACTCACAGCAG
Band lengths:
178-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)