HsaEX0061886 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149506477-149508097:+
Coord C1 exon
chr7:149506477-149506622
Coord A exon
chr7:149507786-149507833
Coord C2 exon
chr7:149508003-149508097
Length
48 bp
Sequences
Splice sites
3' ss Seq
AGATGGTCTTTTTCTCCTAGAAA
3' ss Score
6.12
5' ss Seq
ATGGTCCGC
5' ss Score
1.05
Exon sequences
Seq C1 exon
GGCCAGTGCCTGGCATGTGTCCCAGGGACAAGCAGTGGCTGGACTGTGCCCAGGGCCCTGCCTCTTGTGCAGAGCTCAGCGCCCCAAGAGGGACTAACCAGACCTGCCACCCTGGCTGCCACTGCCCCTCTGGGATGCTTCTGCTG
Seq A exon
AAATTGGAGGGTCCACGTCCCCACGTCCCCACGGCCCCCAAGCCGATG
Seq C2 exon
AACAACGTGTGTGTGCCCACCCAGGACTGCCCCTGTGCCCACGAGGGGCACCTCTACCCCCCGGGCAGCACTGTGGTTCGTCCATGTGAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'75-75,'75-74,76-75
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGACTAACCAGACCTGC
R:
GACGAACCACAGTGCTGCC
Band lengths:
142-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)