HsaEX0062022 @ hg19
Exon Skipping
Gene
ENSG00000073849 | ST6GAL1
Description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 [Source:HGNC Symbol;Acc:10860]
Coordinates
chr3:186681573-186756661:+
Coord C1 exon
chr3:186681573-186681714
Coord A exon
chr3:186714336-186714461
Coord C2 exon
chr3:186756530-186756661
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGGTTACGCATTTGCTGCAGGTG
3' ss Score
6.61
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GCAAGGGGAGAGCCAGTTGCGCAGAGCCCTGCAACCAGCAGTCCAGGGAGAAGTGGTGAATGTCATGGAGCCCAGCTGAAATGGACTGGCCCCCTTGAGCCTGTCCCAAGCCCTGGTGCCAGGTGTCCATCCCCGTGCTGAG
Seq A exon
GTGGTACTTAAGCTCCAAGAACTTACGGCACACCTGCTTGAGTGGATCATGGGTGAGCTGGAGAACCTGAAGTAGCAAAGGCAAGAAGGCAACGACGTTCCATCTGTGGAAGGACCTACCAACCAG
Seq C2 exon
ATGAGTTTTGATCATCCTGAGAAAAATGGGCCTTGGCCTGCAGACCCAATAAACCTTCCCTCCCATGGATAATAGTGCTAATTCCTGAGGACCTGAAGGGCCTGCCGCCCCTGGGGGATTAGCCAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073849_MULTIEX1-4/10=3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGCAGTCCAGGGAGAAG
R:
CTGCTTCTGGCTAATCCCCCA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)