HsaEX0062038 @ hg19
Exon Skipping
Gene
ENSG00000184005 | ST6GALNAC3
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:HGNC Symbol;Acc:19343]
Coordinates
chr1:76540404-76779684:+
Coord C1 exon
chr1:76540404-76540569
Coord A exon
chr1:76775191-76775297
Coord C2 exon
chr1:76779490-76779684
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATCCATGGTTTTCATTGTAGTTG
3' ss Score
5.82
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GCAGCTTACACCGCGGTCCCCTTATTTGGATCTGCGGGAATGTGGGCTGGAGAGGTCCTGCCGTGGTACCAGCCTCCAGCCTGCCCCCAGGACTGCCCCTGACCCAGGCGCGCCCGCTGCTCGGTGGCAGGAGGGCCGGCGGAGCGCCATGGCCTGCATCCTGAAG
Seq A exon
TTGCTGAAGCTTGAGGTCACGATCTGGTGGAAGTGACTACTAGAAGAAGGCACATGTGCATTGTATTCTGTTGTACTTGTCATCTGGAGCACACAGTGTACTTGAAG
Seq C2 exon
AGAAAGTCTGTGATTGCTGTGAGCTTCATAGCAGCGTTCCTTTTCCTGCTGGTTGTGCGTCTTGTAAATGAAGTGAATTTCCCATTGCTACTAAACTGCTTTGGACAACCTGGTACAAAGTGGATACCATTCTCCTACACATACAGGCGGCCCCTTCGAACTCACTATGGATACATAAATGTGAAGACACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184005-'0-7,'0-4,5-7
Average complexity
S
Mappability confidence:
91%=100=83%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0077713=Glyco_transf_29=PU(7.2=27.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGATCTGCGGGAATGTGG
R:
ACCAGGTTGTCCAAAGCAGTT
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)