HsaEX0062221 @ hg19
Exon Skipping
Gene
ENSG00000115145 | STAM2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:HGNC Symbol;Acc:11358]
Coordinates
chr2:153004739-153006743:-
Coord C1 exon
chr2:153006659-153006743
Coord A exon
chr2:153004924-153004990
Coord C2 exon
chr2:153004739-153004814
Length
67 bp
Sequences
Splice sites
3' ss Seq
GATCTTACTTTGTTTTCCAGGCT
3' ss Score
8.3
5' ss Seq
CAGGCATGA
5' ss Score
1.7
Exon sequences
Seq C1 exon
AAAAAGCCACGAATGAGTACAACACTACAGAAGATTGGAGTCTTATTATGGACATATGTGACAAAGTTGGAAGTACTCCTAATGG
Seq A exon
GCTGGTCTCAAATTCATGGGCTCAAGTGATCCTCCCGCCTTGGCTTCCCGAAGTGTTGGAATTACAG
Seq C2 exon
AGCGAAAGATTGCCTAAAAGCCATAATGAAAAGGGTAAATCATAAGGTTCCACATGTTGCTCTGCAAGCACTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115145-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.138 A=0.043 C2=0.325
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(20.4=100)
A:
PF0079014=VHS=PD(15.2=30.4)
C2:
PF0079014=VHS=FE(18.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCACGAATGAGTACAACACT
R:
CTTGCAGAGCAACATGTGGAAC
Band lengths:
151-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)