HsaEX0062732 @ hg38
Exon Skipping
Gene
ENSG00000136854 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11444]
Coordinates
chr9:127639428-127651652:+
Coord C1 exon
chr9:127639428-127639617
Coord A exon
chr9:127642469-127642563
Coord C2 exon
chr9:127651603-127651652
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTGCTGTCTTTGCTGTCAGGAA
3' ss Score
7.28
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
GATATATACCTAGGAATGGAGTTGCTGGATCTCTATGTTTGGTTATTTGAGGAGCTGCCGGCCTGTTTTCCACATCAGCTGTACCATTTTACATTCTCACCAGCAGTGCATGACGGTCCAGTGCCTTTTTATCTTACTGCGCTTAAGGTGTAATTCCTTCTTTCTCAGACTGGACTGTAAATTCTTTGAG
Seq A exon
GAAAGAGGAAGACTACCTAGACATGTTGCTCCAGAGCAGAATTTCCAGCAGTAGATTGAACCTTCGGAGGCCGAGTCCCAGCCCAGTGTAAACTG
Seq C2 exon
AGATTATGCATGATGTGATAAAGAAGGTCAAGAAGAAGGGGGAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136854-'6-27,'6-26,7-27
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0099518=Sec1=PU(0.2=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGTTTTCCACATCAGCT
R:
CCATTCCCCCTTCTTCTTGACC
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development