HsaEX0063548 @ hg19
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:159922408-159954346:+
Coord C1 exon
chr2:159922408-159922483
Coord A exon
chr2:159946096-159946458
Coord C2 exon
chr2:159954149-159954346
Length
363 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTCCTCCCTGGCAGACT
3' ss Score
11.5
5' ss Seq
TTAGTAGGT
5' ss Score
2.18
Exon sequences
Seq C1 exon
AAACAAGTGTTGAAAATGTTAAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAGGCAAGAAGGAAGCAG
Seq A exon
ACTGGATGTTTTCCTAGTGCTTTGGATTATCCATGTCCCATGTGAGCAGGCATCTGCAAGTGTGCCCACACCCAACCACCAACAGCAGAGATGACCAGGACCTGGAAGAGAAACAGAAGGGTGGGAAGAGAAGAAATGCCAGCTGACCCAGAGCCCATCAATGACAGGACTGTGGCAGGCTCAGCACTGCTGGCATCCAACCTTCAGAGCAGGGCACTGGCACTCTTCTTCCTGTTATGCCCGTGTCCACTGTAGTCAGCTGCAAACAAGCTTGCCTCCGAGCAGTGCCTACACACATGTCACTTCGAGCACATGCTTTGTGGAATAGAGCTTCATTTCACCCACTTGCCAAGTTAGGCCTTA
Seq C2 exon
GAAGTGACTTTGGTCCAGAGACTTCTCCAGTCCTGCACCTTGACCACAGTGCTGACTCTCCTGTGAGCAGTCTTCCCACAGCAGAGGACACCTATAGGGTGAGCTTGGCCAAAGGTGTCTCGATGTCTCTGCCTTCCTCACCTTTGCTGCCTCGACAGTCTCACTTGGTGCAATCAAGAGTGAACAAAAAATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183_MULTIEX1-3/10=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=0.400 C2=0.934
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTGTTGAAAATGTTAAAGGCTG
R:
TTTGTTCACTCTTGATTGCACCA
Band lengths:
262-625
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)