HsaEX0063570 @ hg19
Exon Skipping
Gene
ENSG00000136560 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:11562]
Coordinates
chr2:162059998-162061304:+
Coord C1 exon
chr2:162059998-162060106
Coord A exon
chr2:162060662-162060754
Coord C2 exon
chr2:162061186-162061304
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTCATTTATGCAGAAA
3' ss Score
8.69
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
ACTGAGAACTATGAGCAGAGAATACGTGAACAACAGGAACAGCTGTCACTTCAACAGACTATTATTGACAAGCTAAAATCTCAGTTACTTCTTGTGAATTCCACTCAAG
Seq A exon
AAAAAGGTGATTCTTGTGTGAAGTTATATGTATAGGAAAAGAAGAATTCTGATAGAATATATAAACCAAAATATTAACTGGAATAATTCACAG
Seq C2 exon
ATAACAATTATGGCTGTGTTCCTCTGCTTGAAGACAGTGAAACAAGAAAGAATAATTTGACTCTTGATCAGCCACAAGATAAAGTGATTTCAGGAATAGCAAGAGAAAAACTACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560-'19-27,'19-26,20-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=0.000 C2=0.509
Domain overlap (PFAM):
C1:
PF0189514=PhoU=FE(46.2=100),PF075417=EIF_2_alpha=FE(48.6=100),PF0205011=FliJ=FE(50.0=100),PF131661=AAA_13=FE(50.7=100),PF051038=DivIVA=FE(54.5=100),PF040127=PspA_IM30=PD(50.7=91.9),PF089415=USP8_interact=FE(57.1=100),PF041569=IncA=FE(48.6=100),PF125063=DUF3713=FE(47.4=100)
A:
PF0189514=PhoU=PD(10.3=66.7),PF075417=EIF_2_alpha=PD(5.4=33.3),PF0205011=FliJ=PD(5.6=33.3),PF131661=AAA_13=PD(1.4=8.3),PF051038=DivIVA=PD(3.0=16.7),PF089415=USP8_interact=PD(11.1=58.3),PF041569=IncA=PD(9.5=58.3),PF125063=DUF3713=PD(10.5=66.7)
C2:
PF131661=AAA_13=PD(1.4=2.8),PF150661=CAGE1=PD(29.2=77.8),PF041569=IncA=PD(33.3=91.7),PF089415=USP8_interact=PD(25.3=52.8),PF0246513=FliD_N=PD(28.9=72.2),PF125063=DUF3713=PD(28.4=75.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGTGAACAACAGGAACAGCT
R:
TCTTGTGGCTGATCAAGAGTCA
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)