HsaEX0063571 @ hg19
Exon Skipping
Gene
ENSG00000136560 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:11562]
Coordinates
chr2:162016808-162017923:+
Coord C1 exon
chr2:162016808-162016997
Coord A exon
chr2:162017460-162017615
Coord C2 exon
chr2:162017796-162017923
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGTTGTTTTCCCAAGGTG
3' ss Score
10.8
5' ss Seq
TAGGTAGAG
5' ss Score
3.22
Exon sequences
Seq C1 exon
AGAAGAGCCCTGGGCTGGGTGGGGCAGGGCGGAAGGGCCCTGGCCTTGTTGGGTGGAGGTGAAGAGTTAATGGCTCCGCGCGCAGGCACTGCCCTCTGAACTGGAACAAAATGCAACTTCCGGTTGGAGTCACTCGGCCAGGCGCCGGCGACCTGAGGGGAGAGGGAACGCAGCTGAAAGCGTGAACTGT
Seq A exon
GTGGTTGCACAATTCCCCTCTGCCTTCCTGTGGGGTGTCATCATAGCCTGGTCAATGAGAAGTTGGGTAACTTCCCAGAGGGTCACGGAGGGAGTGGGTGGCCAAGGCAGGAAGAACAGAAGCCAACCCCGCCCACAGTGGGAACCCAGGCGTTAG
Seq C2 exon
GAGATGCTTTTGACAAGTTATAATAAGGGAGAGATGGTAGTAAAGGAAGTGAAGAAGCGACGTGAAATTGAAGGAAAAGAAAATGACCTGCCTTCTTACCGCGGTTGGAATACACACCCAAACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560-'2-13,'2-12,4-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.417
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGGTGGAGGTGAAGAGT
R:
GCGGTAAGAAGGCAGGTCATT
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)