HsaEX0063572 @ hg19
Exon Skipping
Gene
ENSG00000136560 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:11562]
Coordinates
chr2:162016808-162033811:+
Coord C1 exon
chr2:162016808-162016997
Coord A exon
chr2:162018324-162018418
Coord C2 exon
chr2:162033623-162033811
Length
95 bp
Sequences
Splice sites
3' ss Seq
AATTATCTGTTTCTCATTAGACT
3' ss Score
7.03
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGAAGAGCCCTGGGCTGGGTGGGGCAGGGCGGAAGGGCCCTGGCCTTGTTGGGTGGAGGTGAAGAGTTAATGGCTCCGCGCGCAGGCACTGCCCTCTGAACTGGAACAAAATGCAACTTCCGGTTGGAGTCACTCGGCCAGGCGCCGGCGACCTGAGGGGAGAGGGAACGCAGCTGAAAGCGTGAACTGT
Seq A exon
ACTACAGATTTCATTAATCCTTTGTGAAATATATGGCAAATATTTTCAAGAATTATCAATGCTTTGGTTTAAAATGCCCAGGCTTTTTATCTCAG
Seq C2 exon
TGTCTATGTCTGGGCCAAGATCCTAGCAACATTAATTATCGTAACAGGATTTCAACTTTTTCATCTATCAGAGGTAGCAGTAGAAACTAACTTCCTAAGTGGAATGCATAAAGAATTGCCATTTCTTCAGTTTTTCAGAAAGTAATGACATTGTTATCCAAAACCCTGGAATTGTTTTTATTGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560-'2-17,'2-14,9-17
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGGTGGAGGTGAAGAGT
R:
TTGCTAGGATCTTGGCCCAGA
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)