HsaEX0064626 @ hg38
Exon Skipping
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:HGNC:11749]
Coordinates
chr13:113584721-113585849:+
Coord C1 exon
chr13:113584721-113584730
Coord A exon
chr13:113585580-113585677
Coord C2 exon
chr13:113585774-113585849
Length
98 bp
Sequences
Splice sites
3' ss Seq
CGCGGGCCACTTTTCCGCAGGGG
3' ss Score
8.18
5' ss Seq
AAGGTCCGC
5' ss Score
5.01
Exon sequences
Seq C1 exon
CTCGGCCAGG
Seq A exon
GGGGCATTTCCGTCTGGCGAGGCGACTGAAAATCCTGAGTGTGGGAGTCGGTTTGGCCAGCTCCGCTCTCAGGATGGAGGGTGCCTTTGGGAAGGAAG
Seq C2 exon
AAAAATCATTTTTCTTCTCTGGGAAGGTGAACATTTGTAGCATTGATTTCCCGGATCTGGTAACATGGCAAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.219
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development