HsaEX0064637 @ hg19
Exon Skipping
Gene
ENSG00000114126 | TFDP2
Description
transcription factor Dp-2 (E2F dimerization partner 2) [Source:HGNC Symbol;Acc:11751]
Coordinates
chr3:141713862-141724386:-
Coord C1 exon
chr3:141724283-141724386
Coord A exon
chr3:141719094-141719196
Coord C2 exon
chr3:141713862-141713983
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGGACCCTTTCTGCTATTAGGAT
3' ss Score
7.7
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
Exon sequences
Seq C1 exon
GCAACATTTCATTTGTTGCATTTCCAGTTTCCAATACCAACTCACCTACAAAGATTTTACCAAAAACCTTAGGACCAATAAATGTGAATGTTGGACCCCAAATG
Seq A exon
GATGCAACCAGAAGGCATCATCTTTGAAGCAGAGAATAAACCCTCACCAGGCACTGAATCTGCCGGCACTTTCATTTTGGACCTCTCAGCAACCTCCAGAACA
Seq C2 exon
ATTATAAGCACACCACAGAGACTAACCAGTTCAGGAAGTGTTCTGATTGGGAGTCCATATACCCCTGCACCAGCAATGGTTACTCAGACACACATAGCAGAAGCTACTGGCTGGGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114126_MULTIEX1-5/7=4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.332 A=1.000 C2=0.434
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTGTTGCATTTCCAGTTTCCA
R:
CCAGGGACCCAGCCAGTAG
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)