HsaEX0064900 @ hg19
Exon Skipping
Gene
ENSG00000217576 | THSD1P1
Description
thrombospondin, type I, domain containing 1 pseudogene 1 [Source:HGNC Symbol;Acc:31375]
Coordinates
chr13:52754717-52760958:-
Coord C1 exon
chr13:52760818-52760958
Coord A exon
chr13:52758111-52758249
Coord C2 exon
chr13:52754717-52754789
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTCTGTATACCAATTCCTAGAGA
3' ss Score
3.88
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AAATGAGCCCGTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGCTCTGTTTTGACAAGCAAACAAGCCAGAACTGCTCAGGCAGCTCCGTAGCATGAGGAAGAGTCAGGGGCACAGAGAGATGGAGAGAGACCTAGTTAG
Seq A exon
AGAGCGAACCATGTGCTGGATTTAGCCAGTCCTGCATTTTTCTATACTTCAAATCAAAACGGGCCATGCTTCACATCTACCCATGATGAATAGGGGTACTTTGATTAAGAATAAATAGAGCTGACTGAATTCTGAACAA
Seq C2 exon
GAAAAACATATTCAAGGGGAAGAGATGTAATAGTTTTGACGTGACGACAGTTACTAAAGAAGCACCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGAGCCCGTGAGTCCTGA
R:
TGTTCAGGTGCTTCTTTAGTAACT
Band lengths:
213-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)