HsaEX0064908 @ hg38
Exon Skipping
Gene
ENSG00000187720 | THSD4
Description
thrombospondin type 1 domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr15:71242649-71256715:+
Coord C1 exon
chr15:71242649-71243096
Coord A exon
chr15:71245940-71246044
Coord C2 exon
chr15:71256613-71256715
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATATACTCCCCAGATG
3' ss Score
8.94
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GAGCAGGACCCGTGGTACCATTGGCCCTGGCAAGTATGGCTATGGTAAGGCCCCATATATCTTACCACTGCAGACAGACACTGCACACACGCCACAGAGGCTCCGGAGACAGAAGCTCTCATCCCGCCATTCCAGGTCCCAGGGAGCATCTTCTGCTAGGCATGGCTACAGTTCACCAGCCCACCAGGTCCCCCAACATGGGCCTTTGTACCAAAGTGACAGTGGCCCTCGCTCTGGACTGCAGGCTGCGGAGGCCCCCATCTACCAGCTACCTTTGACCCATGATCAAGGCTACCCTGCAGCTTCAAGTCTCTTTCACAGCCCAGAAACAAGCAACAACCACGGTGTGGGGACCCATGGGGCAACTCAGAGCTTCTCTCAGCCTGCCCGATCTACAGCAATCTCATGCATCGGGGCCTATCGGCAGTACAAGCTGTGCAACACCAAC
Seq A exon
ATGGACCCATATGCCCCAGCATCTCAGCATCAATGACCTCATGTAGACATTTATCTGTCCTCCCCAGTGTCCAGCATCAAGAGAGGACATGAATGACCCAATTAT
Seq C2 exon
GTATGTCCAGAAAGCAGTAGAAGTATCCGGGAGGTACAGTGTGCATCCTACAACAACAAGCCATTCATGGGCCGGTTTTATGAGTGGGAACCATTTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187720_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
86%=86=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000355327fB7063
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATCAAGGCTACCCTGC
R:
CCACTCATAAAACCGGCCCAT
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development