HsaEX0064919 @ hg19
Exon Skipping
Gene
ENSG00000066654 | THUMPD1
Description
THUMP domain containing 1 [Source:HGNC Symbol;Acc:23807]
Coordinates
chr16:20739216-20748608:-
Coord C1 exon
chr16:20748182-20748608
Coord A exon
chr16:20747592-20747680
Coord C2 exon
chr16:20739216-20746809
Length
89 bp
Sequences
Splice sites
3' ss Seq
AACATTTGTGTGTAATATAGCTG
3' ss Score
5.5
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAATAGTGTGCACCCTCAATTCAGAAAATAAAGTGGATCTCACCAATCCACAGTACACAGTGGTAGTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACATGTTGTTTAGAAAATACAATCTCCAGGAGGTGGTGAAGAGCCCTAAGGATCCGTCACAGCTTAACTCAAAGCAGGGAAATGGGAAAGAAGCTAAACTGGAATCTGCGGACAAATCAGACCAAAACAACACAGCAGAAGGAAAAAATAACCAGCAGGTACCAGAGAATACTGAGGAGCTGGGGCAGACAAAACCAACGTCTAATCCACAGGTGGTAAATGAGGGAGGAGCCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTCAAATGAAAATGACTTCTCATAGGAAGTCATTTGGTGTTGGAG
Seq A exon
CTGACAGTCCAGTGTCGCAATTTTGGAAGGCAAGATGTGAGAGAGACGAGAACCATTTTAGGCATAGAACTACAGACATTTCTGAAAAG
Seq C2 exon
AGATGCTGATATCAAAAACTTGAAGATACAGTGAAGTTCTGAATAATGTTACAAAACTGGTTACCTGTATCAAAGACCCATTTATGCAAAAATGTTAAAAAAAAAAAAAAACACCCAAAACAAAAACCTGGACAGACAGCACATAAACCTCCTGCACCATACAGACATCCAGTGGCTTCTCAGAGGAAGCGTTCTCTACAGGATATTTGAATTGAAAGGTGAATTGCCAGAGTACTTACAATAAAACAGCCAGCTTTTGCTGAGTGCTTTGGAAATGAAAAATGACTACAGAAAGTAGCCTATTTTGCAGACGTTTTTCATCACATGAACAAATGGACAAGTCTCTGAAAGGTTCTGGGGAAAAAAATTTTTCTTAAAGCGACAAGACTCTTAGATCTAAAAGGAAACTGACTTGCCACCTTGCCAGAGGAATTCTTGAAATGTTTCTGCAGCCACTTGGCCTTGAAAATAAAGGGTGCAACTCTCAAATCTTGTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066654_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.622 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0292612=THUMP=PD(24.3=25.7)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTCATTTGGTGTTGGAG
R:
TGGTGCAGGAGGTTTATGTGC
Band lengths:
181-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)