HsaEX0064955 @ hg19
Exon Skipping
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:11805]
Coordinates
chr21:32638326-32649224:-
Coord C1 exon
chr21:32649048-32649224
Coord A exon
chr21:32640727-32641011
Coord C2 exon
chr21:32638326-32639299
Length
285 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTGCTTCTTAAAGATA
3' ss Score
7.58
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTTTTTGGCGCATTCTCACAGACTTAGATGAAACTGTGATGGCCACCGCAGGGGGCAGGTGCTGACATCGTCCCCAGCCCTGTGGCTGTTCATCCGGACATCATTTCCAACCTCAATATCTAAATGCCACAGTGCTCTTGGAGCAAGTTGGGCTGGGGACCACTGTTGCCTTTTAAG
Seq A exon
ATACCAGAGAAGCGTGAACATATTGCTTTGAAATCTACTTGCTCCTAGTAAAAAAGAGATTGTCTTTATTGGAAAATTCCCTCTGAGATTCCTGTGATGTGTGACCTGGTGGGGAATATTCCAGCCTGGGAACAGCTTAACATCTGGTGTCTGTATGAGTTACCCCTGAACTCACTGGAACATTCAATGGAGGGTTTCCCTTTGTGTTGCCACAAATTTTATTTCAGTGAAGATGTGCTGGTGAGAGTTTCAGCAACGTTTTAGCCTGAACAGTGGAATTATAGA
Seq C2 exon
ACCATAAAACCATGGGAAACGCAGAAAGTCAACATGTAGAGCACGAGTTTTATGGAGAAAAGCATGCCAGCCTGGGGCGCAAGCACACTTCCCGCTCCCTGCGCCTCTCGCACAAGACGCGGAGGACCAGGCACGCTTCCTCGGGGAAGGTGATCCACAGGAACTCCGAAGTGAGCACCCGATCCAGCAGCACCCCCAGCATCCCCCAGTCCCTGGCTGAAAATGGCCTGGAGCCCTTCTCCCAAGATGGTACCCTAGAAGACTTCGGGAGCCCCATCTGGGTGGACCGAGTGGACATGGGCTTGAGACCTGTGTCTTACACTGACTCTTCTGTCACTCCCAGCGTAGACAGCAGCATCGTCCTCACAGCAGCCTCTGTGCAGAGCATGCCAGACACTGAGGAGAGCAGGCTTTACGGGGATGACGCTACATATTTGGCTGAGGGAGGCAGGAGGCAGCATTCCTATACATCCAATGGGCCCACTTTCATGGAGACGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299-'6-8,'6-7,7-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.728
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCACAGTGCTCTTGGAG
R:
ACCATCTTGGGAGAAGGGCTC
Band lengths:
306-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)