HsaEX0065115 @ hg38
Exon Skipping
Gene
ENSG00000198586 | TLK1
Description
tousled like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr2:171058151-171061156:-
Coord C1 exon
chr2:171061081-171061156
Coord A exon
chr2:171059924-171059986
Coord C2 exon
chr2:171058151-171058197
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTCATCTTCTGCAGGGT
3' ss Score
11.65
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ACACCGGAGAAGAAACAATCGGAATCATCCAGGGGAAGAAAGAGAAAAGCAGAAAACCAGAATGAAAGTAGTCAGG
Seq A exon
GGTTCCCCAACCTCCCGGTCTTCCAGTCCTTGGCCTATTGGGAAATGGGTCGTACAGCAGGAG
Seq C2 exon
GAAAAAGTATTGGGGGACGTGGCCACAAAATTAGCGACTATTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198586_MULTIEX3-1/11=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.282 C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCGGAGAAGAAACAATCGG
R:
TAGTCGCTAATTTTGTGGCCACG
Band lengths:
116-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development