HsaEX0066794 @ hg19
Exon Skipping
Gene
ENSG00000127191 | TRAF2
Description
TNF receptor-associated factor 2 [Source:HGNC Symbol;Acc:12032]
Coordinates
chr9:139777119-139793380:+
Coord C1 exon
chr9:139777119-139777162
Coord A exon
chr9:139784801-139784994
Coord C2 exon
chr9:139793165-139793380
Length
194 bp
Sequences
Splice sites
3' ss Seq
AGCACATTGTTCGTTTCCAGGTT
3' ss Score
8.93
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAAGGAGCCCACGTGGGAATCCCCTGAGCTGCGCCATGGCCAGA
Seq A exon
GTTGAATCGCTCCTAGCTGACCCCTCACGTCTCTTATGATACGTACAGAAAGCAAGAGCAGCCCATGCCGTCCGGCCGCGCACCAGGTCTCAGTCTGTGTGTCTGGTTCAGGTGACCATGGTGTTCAGTTCAGTTCCTCCTGCCTCGTGTGTAGGCCACTGAGAGCTCCCTAGTCTAAGCCGGAGGAGGTTCTG
Seq C2 exon
GGCTTTGTTCGCGGGGGTCACAGCTCTCATGGCTGCAGCTAGCGTGACCCCCCCTGGCTCCCTGGAGTTGCTACAGCCCGGCTTCTCCAAGACCCTCCTGGGGACCAAGCTGGAAGCCAAGTACCTGTGCTCCGCCTGCAGAAACGTCCTCCGCAGGCCCTTCCAGGCGCAGTGTGGCCACCGGTACTGCTCCTTCTGCCTGGCCAGCATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127191_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(74.4=46.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCCCCTGAGCTGCGC
R:
GAGGATGCTGGCCAGGCA
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)