HsaEX0066801 @ hg19
Exon Skipping
Gene
ENSG00000131323 | TRAF3
Description
TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:12033]
Coordinates
chr14:103243816-103336783:+
Coord C1 exon
chr14:103243816-103244012
Coord A exon
chr14:103296671-103296809
Coord C2 exon
chr14:103336522-103336783
Length
139 bp
Sequences
Splice sites
3' ss Seq
CCAATCCCTTTATTTTACAGATG
3' ss Score
10.32
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
Exon sequences
Seq C1 exon
GGGAGCGCGGCGCGGCCGCCGCGTGCGCGAGCCGGGGTTGCAGCCCAGCCGGGACTTTCCAGCCGGCGGCAGCCGCGGCGGCCGCCGGCTCTTCCCCGCCCCCCGCCATGGGGCAGCCCGGGGAGCAGAACGCTGCGGACCGCGGCGGAGGACGCGCCCGGCGCCCCTGAGCCGGCCGAGCGGCGACGGACCGCGAG
Seq A exon
ATGAGGAAAATGAGGCCCAAAGAAGTGATGCCACTTGGTTAAGGTCCCAGAGCAGGTCAGAATCAGACCTAGGATCAGAAACCTGGCTCCTGGCTCCTGGCTCCCTACTCTTCTAAGGATCGCTGTCCTGACAGAAGAG
Seq C2 exon
AACTCCTCTTTCCTAAAATGGAGTCGAGTAAAAAGATGGACTCTCCTGGCGCGCTGCAGACTAACCCGCCGCTAAAGCTGCACACTGACCGCAGTGCTGGGACGCCAGTTTTTGTCCCTGAACAAGGAGGTTACAAGGAAAAGTTTGTGAAGACCGTGGAGGACAAGTACAAGTGTGAGAAGTGCCACCTGGTGCTGTGCAGCCCGAAGCAGACCGAGTGTGGGCACCGCTTCTGCGAGAGCTGCATGGCGGCCCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131323_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.317
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0443811=zf-HIT=WD(100=24.4),PF0009720=zf-C3HC4=PU(74.4=35.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCGGGACTTTCCAGC
R:
CGGTCAGTGTGCAGCTTTAGC
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)