HsaEX0067033 @ hg19
Exon Skipping
Gene
ENSG00000221926 | TRIM16
Description
tripartite motif containing 16 [Source:HGNC Symbol;Acc:17241]
Coordinates
chr17:15584179-15586685:-
Coord C1 exon
chr17:15586350-15586685
Coord A exon
chr17:15586168-15586265
Coord C2 exon
chr17:15584179-15584267
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATTTTAGTTTTTCTTTACAGCAA
3' ss Score
7.99
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGTCTGACTCTGCAGGGCCCTAGTGGTATAAAGGTACTGAGACTTGCCTGTGTTCAGGGCTTCCTGAAGATTAAATGGCTGCCGAAGTTCTTGAGTTTAGCTTTAGCTCAAAAGATACTGCGTCAGACTCTGCGTTCTGAGTAGAGTCTCAGAGAATGAAAAAAGAAATACAATGAAAAAGGGGAAAACTTCAATCCAGAACCTCTTACCACAGTTTCTGGTAGAATGCTGGCAATTTCCAGGAAGATACGTGGAGAACGGAAAGGTTGCTACACCCAAATAGTGAAGCAAAGGCTATGATTATGGAGGATTGGACCTGCAAACTCCAGAACAGAG
Seq A exon
CAACCTTGTAAAATGTGTGTGGGCAGCACAGAGAACTTGGGCAAGTTAACAGTTTCCTCATCTGTGAATACTGATTTATGGAAAGCACCTGGTGCGTG
Seq C2 exon
TTCTGCCCTCTGAGGACCCTGCCCTTTCCCAAAAGGGGTATCTTAAGAAGGAAAATATGGCTGCTCTTTGCCGGACAGCAGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221926_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149511=DUF4503=PU(8.9=45.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGAACGGAAAGGTTGCT
R:
CTCTGCTGTCCGGCAAAGAG
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)