HsaEX0067830 @ hg38
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr2:165858215-165871211:-
Coord C1 exon
chr2:165870797-165871211
Coord A exon
chr2:165864984-165865077
Coord C2 exon
chr2:165858215-165858404
Length
94 bp
Sequences
Splice sites
3' ss Seq
AAATATTCATCTACTTGCAGAAT
3' ss Score
6.94
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TCCTGTCTCTGAGCTTCCTTCTCCAGGTTTGCTCCTTTCCATCAGGTATCACTTTATCACCACCTCCTCAAAGAGGCCGTGTTCATGTCCAGGCCCACAATCTCAAGTAGCCATCCTGTGATTCTGTATCATATTATCCTTTTTAAACTCTATGCAGCATTTACTACCTCTGATGTTTTTTCTTCTTTAAGGATTTGATTGCCTTATGTGACAAGCCCAAGATCTGTGACAGTTGGAGCTCAAACTAGGCAGTCTTGATTCCAGACTGCTCTGAACTAGTATTTGAAGGAACTAATGAACATGACATGTTAAATGAAAGTTTGGGGACGTACACTCAGGATGGAAGCAGGGGGACACAACAGAAATGAAAGAATTTTCTGTAGATCTGGGATCTGGACACCTGCCCCCCGTCATG
Seq A exon
AATAAATGCCATCCCTTCCCACGCCAACCATATCGATGATATAGTGGCAGGAAGGAGAGTAAGGGACTCTGGAGCTTAAACAGACCATCACATG
Seq C2 exon
GGAAGGCAGTAAACAAGATGCTAACTGATGGAGTGAAATCCCCAGGAGATGCAGAAGGCAAGTGCAGCTAACTGAGGCCTCAGGGGCAGGAGATGCCCATCAGGATGAGAGCTATGTCTTTCTCCAGTGATGACTCTGCTTCTATGAGGTCACCAGCAGTAGAACCATATCTTGCTGGCATACACTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607_MULTIEX2-2/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGGGACACAACAGAAAT
R:
AGCTCTCATCCTGATGGGCAT
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development