HsaEX0067831 @ hg19
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166714725-166727501:-
Coord C1 exon
chr2:166727307-166727501
Coord A exon
chr2:166719454-166719575
Coord C2 exon
chr2:166714725-166714914
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTCTGAACTGTCATTACCAGCAC
3' ss Score
4.43
5' ss Seq
CATGTACGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GATCTGTGACAGTTGGAGCTCAAACTAGGCAGTCTTGATTCCAGACTGCTCTGAACTAGTATTTGAAGGAACTAATGAACATGACATGTTAAATGAAAGTTTGGGGACGTACACTCAGGATGGAAGCAGGGGGACACAACAGAAATGAAAGAATTTTCTGTAGATCTGGGATCTGGACACCTGCCCCCCGTCATG
Seq A exon
CACCCTCAGTCATCACAGTCATTAGACTGGACATCTGCCTCCATGGAGAATATGTGAATACCTGTGAATGTACTTCCTGGAGGCGCTGCCAAACTATTTCCAGCAATGACAAAACATAGCAT
Seq C2 exon
GGAAGGCAGTAAACAAGATGCTAACTGATGGAGTGAAATCCCCAGGAGATGCAGAAGGCAAGTGCAGCTAACTGAGGCCTCAGGGGCAGGAGATGCCCATCAGGATGAGAGCTATGTCTTTCTCCAGTGATGACTCTGCTTCTATGAGGTCACCAGCAGTAGAACCATATCTTGCTGGCATACACTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-'39-43,'39-42,42-43
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGTACACTCAGGATGGA
R:
GGTTCTACTGCTGGTGACCTC
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)