HsaEX0067832 @ hg19
Exon Skipping
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166789483-166797694:-
Coord C1 exon
chr2:166797537-166797694
Coord A exon
chr2:166793431-166793577
Coord C2 exon
chr2:166789483-166789567
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTCGATGTACCACAGTTT
3' ss Score
4.58
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GCACAATGCCTTGAGATGCGCCAGAATTATTCAGGTGCCCTGGAGACTGTGAACCAGATAATCGTGAATTTTCCGAGCTTCCTTCCTGCTTTTGTTAAGAAAATGAAATTACAACTAGCCTTGCAGGATTGGGACCAGACAGTTGAGACAGCACAAAG
Seq A exon
TTTTATCCATTGAAGGACATCTTGATTGCTTCCAAATTGTGGCATTTATGAATAAAGCTACTATAACCTTGTGCAGGTTTTTGTATGGACATCAGTTTTCAACTCCTTTGGATCAAATGCCAAGGAACATAATTCCTGAATCATATG
Seq C2 exon
GTTGCTGCTCCAAGATAGCCAAAATGTGGAAGCACTGAGAATGCAGGCACTCTACTATGTGTGTAGAGAGGGGGATATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-'7-8,'7-6,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(48.0=45.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATGCCTTGAGATGCG
R:
TTCTCTATATCCCCCTCTCTACACAC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)