HsaEX0068588 @ hg19
Exon Skipping
Gene
ENSG00000117143 | UAP1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:12457]
Coordinates
chr1:162531323-162536138:+
Coord C1 exon
chr1:162531323-162531567
Coord A exon
chr1:162532263-162532374
Coord C2 exon
chr1:162535802-162536138
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTTGGCCAAGCAGAAG
3' ss Score
4.16
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTGTGCTCCCGGCGCTGACGTGTCTGGGCGGTCGGCTTCCACTCCTTCAGGCGTCGGCAGCCACTAGTCGTGGCGAGAGGGGCGGGGTGGCCGGGGCTGGCGCTCCACTTGGCCCCCGCTCCCGGCCCGCCCCGCCGCCGCGGCCCCCCGGATGAGGGTATATATTCGGAGCGAGCGCGGGACGCCGATGAGTGGCCGCGCGGAAGGAGCTGGAGACGGTCGTAGCTGCGGTCGCGCCGAGAAAG
Seq A exon
AAGGATGGTATTGGAGGGCTGAGCACACGTATGCTGAACATATGGCTGCTTGAACTTTGGCCTGTCGCTGTGCTACACTTACTTCTACATGGTTTATGAAATCTGAAATCAG
Seq C2 exon
GTTTACAGGTACATACATTACACCCCTATTTCTACAAAGCTTGGCTATTAGAGCATTATGAACATTAATGACCTCAAACTCACGTTGTCCAAAGCTGGGCAAGAGCACCTACTACGTTTCTGGAATGAGCTTGAAGAAGCCCAACAGGTAGAACTTTATGCAGAGCTCCAGGCCATGAACTTTGAGGAGCTGAACTTCTTTTTCCAAAAGGCCATTGAAGGTTTTAACCAGTCTTCTCACCAAAAGAATGTGGATGCACGAATGGAACCTGTGCCTCGAGAGGTATTAGGCAGTGCTACAAGGGATCAAGATCAGCTCCAGGCCTGGGAAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117143_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.123
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0170413=UDPGP=PU(11.7=53.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATATATTCGGAGCGAGCGC
R:
AGTTCTACCTGTTGGGCTTCT
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)