HsaEX0068595 @ hg19
Exon Skipping
Gene
ENSG00000130985 | UBA1
Description
ubiquitin-like modifier activating enzyme 1 [Source:HGNC Symbol;Acc:12469]
Coordinates
chrX:47053228-47057754:+
Coord C1 exon
chrX:47053228-47053423
Coord A exon
chrX:47056346-47056423
Coord C2 exon
chrX:47057708-47057754
Length
78 bp
Sequences
Splice sites
3' ss Seq
GGCTTCTTTAACCCTGCCAGCAG
3' ss Score
2.95
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATCTTGTGTCGGCGGCTCGGCTGTAAGGAGGTGGCAGGGACAACCACAACCACAACGGCCGGGGGAGGAGAAGGCGGCAGCGGCGATTCTAGGCGGCCCAGGCGGCGGGGAGGAGGAGAAGGAGGAGGGTGGCGGCCGGGCTTGGCTTCGGCTCCTTGAGGAGTTGGCGGCGGCGCGACCCGGGGAACCGGCATTG
Seq A exon
CAGCCCCTTGAAGACAGTTTCATTTGTCCCAGCTTTTGGAGAAAATGAGGCTCAGAGGAAATGAGATCTCTACCCCAG
Seq C2 exon
GTTCTATGCTCTGTGTTATTTATCATCTCGATAACCCCGTGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130985-'3-13,'3-8,5-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.099
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGAGAAGGCGGCAG
R:
CCCACGGGGTTATCGAGATGA
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)