HsaEX0068597 @ hg19
Exon Skipping
Gene
ENSG00000130985 | UBA1
Description
ubiquitin-like modifier activating enzyme 1 [Source:HGNC Symbol;Acc:12469]
Coordinates
chrX:47053228-47056423:+
Coord C1 exon
chrX:47053228-47053423
Coord A exon
chrX:47055755-47055868
Coord C2 exon
chrX:47056346-47056423
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCCCTTCTCTATGCCCTAGCTT
3' ss Score
8.26
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATCTTGTGTCGGCGGCTCGGCTGTAAGGAGGTGGCAGGGACAACCACAACCACAACGGCCGGGGGAGGAGAAGGCGGCAGCGGCGATTCTAGGCGGCCCAGGCGGCGGGGAGGAGGAGAAGGAGGAGGGTGGCGGCCGGGCTTGGCTTCGGCTCCTTGAGGAGTTGGCGGCGGCGCGACCCGGGGAACCGGCATTG
Seq A exon
CTTCTCCATCCTGCTAACCTGCCTCCTCTCACACCTCCAAGACTCCTCCCTCAAACCCTCTGGTTTGGGAATAGAGAATGCTTACGCTTGAAAATCTTCAGTTTGGAGACTCAG
Seq C2 exon
CAGCCCCTTGAAGACAGTTTCATTTGTCCCAGCTTTTGGAGAAAATGAGGCTCAGAGGAAATGAGATCTCTACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130985-'3-8,'3-6,4-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGAGGTGGCAGGGACAAC
R:
AGATCTCATTTCCTCTGAGCCTCA
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)