HsaEX0068983 @ hg38
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:170008804-170015366:+
Coord C1 exon
chr2:170008804-170008940
Coord A exon
chr2:170014815-170014865
Coord C2 exon
chr2:170015281-170015366
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCTTAATATTGATTTCCAGATA
3' ss Score
8.4
5' ss Seq
TTGGTATGC
5' ss Score
5.91
Exon sequences
Seq C1 exon
TCAGAAACAAATTTAAGTAAAGAAATGGAATCTGTAATGAAAGATATAAAAAATACCACTCAGAAGAAATATAGAGACTATAGCAAGACCCCGGGCTCACCAGACAATGATTTTCTCTTTATGTACTCTGTTGCTAG
Seq A exon
ATACCATCTAACCTCCAATGAATGATAACCATTTCTCTGATAGAAAAATTG
Seq C2 exon
AACCAATTTAGAACTTGAATTGATTCATCGAGGAGGCAATTTGTGTTCAGGTGGTGCAAGCACAGCTGGCAAAAGGTCTTGTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357_MULTIEX4-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTATAGCAAGACCCCGGG
R:
ACAAGACCTTTTGCCAGCTGT
Band lengths:
145-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development