HsaEX0069392 @ hg19
Exon Skipping
Gene
ENSG00000156687 | UNC5D
Description
unc-5 homolog D (C. elegans) [Source:HGNC Symbol;Acc:18634]
Coordinates
chr8:35092975-35407028:+
Coord C1 exon
chr8:35092975-35093405
Coord A exon
chr8:35117494-35117666
Coord C2 exon
chr8:35406810-35407028
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTTATCATTTTTCCCCCCAGGTT
3' ss Score
11.83
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CGGACTCTCGCCTCCGCTCCGTAGTTCGGGGCCCGGCAGCGGCGCGAGGGCTGGGAACTGCGCGGCGGGGACTGCGGGCGACTCCGGCATCCGCGCTGGCGGCAGCGGTCGCCGCGCCGTGGGAAGCTATGGGGACGCGCCCTTTCTCGGGGTGCCCATTCAGCGGCGGCTCGGAGCTCCCTGCCCCGCTGCTTTAGGAAGCGATCGTGGAGCAGAGTCACTCTCTGAAGACTCCCGAGACCCATTCGACTCGGGACCCTCATCGCCGACCCTTTCCCGGGCTCCCGGAGCGTGAAGAAGAGCCGCCCTCCGGAACGCGGCGAGGAGCATGGGGAGAGCGGCGGCCACCGCAGGCGGCGGCGGAGGGGCGCGCCGCTGGCTCCCGTGGCTGGGGCTGTGCTTCTGGGCGGCAGGGACCGCGGCTGCCCGAG
Seq A exon
GTTCATGCTAGGATACAAATAAAAAAGTGTCTCTGAAGATTTTAATTGAGAAAACGACTGCCTCCTTCTTTGGCAATGATTTGCCAAATCTCTAACCGCTGAGAATGAAATCAACGCACCATCAGGAACTTGCCAGTGTTATTCCTGAGTGAATTTTGCCTTCAGAGTGACAG
Seq C2 exon
GAACTGACAATGGCGAAGCCCTTCCCGAATCCATCCCATCAGCTCCTGGGACACTGCCTCATTTCATAGAGGAGCCAGATGATGCTTATATTATCAAGAGCAACCCTATTGCACTCAGGTGCAAAGCGAGGCCAGCCATGCAGATATTCTTCAAATGCAACGGCGAGTGGGTCCATCAGAACGAGCACGTCTCTGAAGAGACTCTGGACGAGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156687-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.284
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGACTCCCGAGACCCAT
R:
GATGGATTCGGGAAGGGCTTC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)