HsaEX0070006 @ hg19
Exon Skipping
Gene
ENSG00000148429 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:16858]
Coordinates
chr10:11535118-11543207:-
Coord C1 exon
chr10:11543100-11543207
Coord A exon
chr10:11537051-11537229
Coord C2 exon
chr10:11535118-11535227
Length
179 bp
Sequences
Splice sites
3' ss Seq
GCTCTATAATCATAACCTAGGAA
3' ss Score
3.84
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTTCATAGGCGAATTTACAAAGGAATACCACTCCAGCTCAGAGGTGAAGTCTGGGCCCTCCTTCTTGAGATCCCTAAAATGAAAGAAGAAACAAGGGACCTGTATAGT
Seq A exon
GAAAAACCAGGCCATACAGAGATAGGAGCTGAGGGGACACAGTGAGAAGTGACCAGAAGACAAGAGTGCGAACCTTCTGTTATGCCCGGACAGGGCCACCAGAGGGCTCCTTGGTCTAGCGGTAACGCCAGCATCTGGGAAGACGCCCGTTGCCAGGCGGACCGAGGTCTAGCAGTAGC
Seq C2 exon
AAATTAAAACACAGAGCACGGGGCTGTTCACCTGACATCAGACAAATAGACCTGGATGTCAACCGCACATTTCGGGACCACATTATGTTTAGAGACAGATATGGTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148429-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.028 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(11.9=69.4)
A:
NO
C2:
PF0056613=RabGAP-TBC=FE(17.1=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAGGCGAATTTACAAAGGAATACC
R:
TGTCTCTAAACATAATGTGGTCCCG
Band lengths:
202-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)