HsaEX0070255 @ hg19
Exon Skipping
Gene
ENSG00000160293 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:12658]
Coordinates
chr9:136790973-136793014:-
Coord C1 exon
chr9:136792918-136793014
Coord A exon
chr9:136791338-136791449
Coord C2 exon
chr9:136790973-136791070
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCCCTTCCCTCTTAGGAC
3' ss Score
11.71
5' ss Seq
ATTGTACGT
5' ss Score
5.63
Exon sequences
Seq C1 exon
GATCCTAGGAGGCTGTGATTTCAAGACCTGAGTTCAAGCTCTGGGAGCGGCCTTGGCCCATGAGTGGATCCCTTGATCTCCATGCCAGTGGTGTGAG
Seq A exon
GACTTGGCTCTGGGAAGAGGGGCCTCTGGGTGGCAGTGGTGGCAGCAGCCCACGCTTCAGGACGCACTAGGAGCAGAGGAGGTGTGCTCAGGCCCTGCCATTGTTTCTCATT
Seq C2 exon
TGCCCCCAAGACATTAATTGTGTCTGTTGGAGCCTGACAATTTGATGTTTGCAGCAAAAAAGCCAAATGAGACCAAGAAGGAGAAAAGAAAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160293-'2-4,'2-3,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAGGAGGCTGTGATTTCA
R:
TTTCTTTTCTCCTTCTTGGTCTCA
Band lengths:
186-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)