HsaEX0071440 @ hg19
Exon Skipping
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:26697]
Coordinates
chr2:160097582-160105023:-
Coord C1 exon
chr2:160104883-160105023
Coord A exon
chr2:160098196-160098387
Coord C2 exon
chr2:160097582-160097626
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCATTTTTTTGCCAGCTT
3' ss Score
7.49
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AATCTCTAGGACTGCGTAGTAAAGTGCTGAGGAAAATTGAAGAGCTCAGGACCAAGGTTAAATCCCTTTCTTCAGGAATTCCTGATGAATTTATATGTCCAATAACTAGAGAACTTATGAAAGATCCGGTCATCGCATCAG
Seq A exon
CTTACCACAAGTGACTCTATAGAAAACATCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGAAGGCAGAGGTTGCAGTGAGCCGAGATCATGCCACTGCACTCTAGCCCCGGCGACAATGTGAGACTCCATCTCAAAAAAAAAAAGAAAAAAGAAAACATCCCCAGTCATGTATTTACAG
Seq C2 exon
AGCCTTCACCGTGTTGGGTTATACTTGGTTATACTCTGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151-'12-12,'12-11,13-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PD(24.2=33.3),PF0456410=U-box=PU(28.8=43.8)
A:
PF0456410=U-box=PD(8.3=40.0)
C2:
PF0456410=U-box=PD(12.0=18.8),PF0456410=U-box=PU(8.8=31.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAGGACTGCGTAGTAAAGTGC
R:
GTCAGAGTATAACCAAGTATAACCCA
Band lengths:
178-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)