HsaEX0071441 @ hg19
Exon Skipping
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:26697]
Coordinates
chr2:160092304-160105023:-
Coord C1 exon
chr2:160104883-160105023
Coord A exon
chr2:160097582-160097626
Coord C2 exon
chr2:160092304-160092701
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCACTCTGCTTTTTCTCTAGAGC
3' ss Score
9.5
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AATCTCTAGGACTGCGTAGTAAAGTGCTGAGGAAAATTGAAGAGCTCAGGACCAAGGTTAAATCCCTTTCTTCAGGAATTCCTGATGAATTTATATGTCCAATAACTAGAGAACTTATGAAAGATCCGGTCATCGCATCAG
Seq A exon
AGCCTTCACCGTGTTGGGTTATACTTGGTTATACTCTGACTTCAG
Seq C2 exon
ATGGCTATTCATATGAAAAGGAAGCAATGGAAAATTGGATCAGCAAAAAGAAACGTACAAGTCCCATGACAAATCTTGTTCTTCCTTCAGCGGTACTTACACCAAATAGGACTCTGAAAATGGCCATCAATAGATGGCTGGAGACACACCAAAAGTAAAATTGTTGATATTGTATTATTTATATTTTCAGTGATCTCATTTGAATGATTTATAGGTAAATACTAATCAGACATTATTAAAAGCAAAACAGGAAAAAGGTAAACTTCTTAAATTTAGTTACCTATAAAAATTGTCAATTTTCATTCTTTAAAAAACACATGGACTTACTATAAAAGCCTTTTTGTACTAGTGAAAAGAATCTTCAGCTATATAGAAATAAAGTTATACTTTAAATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151-'12-13,'12-12,14-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PD(24.2=33.3),PF0456410=U-box=PU(28.8=43.8)
A:
PF0456410=U-box=PD(12.0=18.8),PF0456410=U-box=PU(8.8=31.2)
C2:
PF0456410=U-box=PD(69.9=96.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTATGAAAGATCCGGTCATCGCA
R:
TGGTGTAAGTACCGCTGAAGGA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)