HsaEX0072521 @ hg19
Exon Skipping
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:28654]
Coordinates
chr3:113677210-113681829:+
Coord C1 exon
chr3:113677210-113677385
Coord A exon
chr3:113678368-113678447
Coord C2 exon
chr3:113679567-113681829
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCCATGTTTCACCAGGTA
3' ss Score
10.86
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
CTCGGCTCTGTCCTTCACCTGCGTGTGGTACTCTGTGATCATCACAGCAGGCATGGCCTACATCTTCCTGATCCAGCTGATCAACATCAGCTACAATGTGACTGAGCGGGAAGTCCAGCAGGCCCTCCGACAGAAGACTGGGCGCCGGCTCCTCTGCGGGCTCATCGTGGACACAG
Seq A exon
GTAAGGTGCTAGCACACTTGTGACTGTGGCTGGAAGAGGAGAACAGACACTCCTGTGGGGATGCTTTACTCTCTTTTCTG
Seq C2 exon
GGTTACTTGGATGAGCCAACTCCGCTTCCTTCCCATGGATAGGAAGGGACTCTGTGTATTATTCAGGTTTATTGGCACGAAGATACTTGTTTTAAGTTCCTTGAGAACCCATGATGGACAGTTGACAGAATGCTTAAACCTGTCAAAAGATGAGTGATCTTGTGTGGGAAAAGCCTTCCCAGGCGTCTGTACCGAAAGGAGCAGCAAACAAGGGGCTAATCCATGAGCAGTGTTCTGTAGGCTCTGTGACATCTTTGGTTTATAGGATTTTGGAGCCTTTTATGATCTGGAACTATTTGAGGGGTTTCATTATAGGCCTTGGTTCTCTCCAGGGGCCAGATGAGTTTATTGTGGAATCTTTGAAAGGACAAGGCCTCTGTGAATGAATCAGTCCCAGGGAAGCATTTGGTGGTGGCGGCAGTGGAGGATTGCCCGGTGAACCTATAAATCAGCAGTCTCTTGGGCAGAGGAGCAAGCCCCTCGAACATGATTTCAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307-'8-11,'8-10,11-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PD(20.9=73.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGCCTACATCTTCCTG
R:
TATCCATGGGAAGGAAGCGGA
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)