HsaEX0072598 @ hg19
Exon Skipping
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:19899]
Coordinates
chr8:135669804-135725281:-
Coord C1 exon
chr8:135725088-135725281
Coord A exon
chr8:135699036-135699137
Coord C2 exon
chr8:135669804-135669980
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTGGGCTGCTCTTCTTTCAGAAG
3' ss Score
7.82
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AGACTCCATCCGCCATGTTGGATGCCGCAGATTCGCCATAACCTCGCCGGCTCTTTTCTTAAAAAAATAAAAATAAAAAGCGAAGCGTCAGCAGGGCGCCCCGCCCCCTCGGTCGGCACGGGAGGGGGCCCGGAAGAGCCCGAGGCTTTTTTTTCCTCCGCGGTGGGGCGTTGCCATGGAGACGCGGGCGGCAG
Seq A exon
AAGAGACAATGAGGGATAAAGAAATTCAGAGACGTATGCAGAATCCATCCATTGGAAGTGTGAGAGCCACTTAGGAGCTGGGAGGCCTGGGCTTCTGACAAG
Seq C2 exon
AAAACACGGCCATCTTTATGTGTAAATGTTGTAACCTCTTCTCACCAAATCAGTCGGAACTCCTCTCCCACGTTTCAGAGAAGCACATGGAAGAAGGGGTTAATGTTGATGAGATTATTATTCCCCTTAGGCCTCTGAGTACACCTGAACCCCCCAACTCAAGCAAAACCGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827-'0-8,'0-4,2-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=1.000 C2=0.627
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAACCTCGCCGGCTCTTTT
R:
TGTGCTTCTCTGAAACGTGGG
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)