HsaEX0072599 @ hg38
Exon Skipping
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT-hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr8:134657561-134713038:-
Coord C1 exon
chr8:134712845-134713038
Coord A exon
chr8:134674730-134674888
Coord C2 exon
chr8:134657561-134657737
Length
159 bp
Sequences
Splice sites
3' ss Seq
GTCAGGCCCCTCTGCTGCAGGTC
3' ss Score
6.9
5' ss Seq
GAGGTGTCT
5' ss Score
1.75
Exon sequences
Seq C1 exon
AGACTCCATCCGCCATGTTGGATGCCGCAGATTCGCCATAACCTCGCCGGCTCTTTTCTTAAAAAAATAAAAATAAAAAGCGAAGCGTCAGCAGGGCGCCCCGCCCCCTCGGTCGGCACGGGAGGGGGCCCGGAAGAGCCCGAGGCTTTTTTTTCCTCCGCGGTGGGGCGTTGCCATGGAGACGCGGGCGGCAG
Seq A exon
GTCTGCTGGAGTTTGCTGGAGGTCCGCTCCATACCCTGTTTGCCTGGGTATCACCAGTGGAGGCTGCAGAACAACAAAGATTGCTGCCTGTTCCTGCCTCTGGAAGCTTCGTCCCAGAGGGGCACCTGCCAGATGCCAGCCAGAGCTCTCCTGTATGAG
Seq C2 exon
AAAACACGGCCATCTTTATGTGTAAATGTTGTAACCTCTTCTCACCAAATCAGTCGGAACTCCTCTCCCACGTTTCAGAGAAGCACATGGAAGAAGGGGTTAATGTTGATGAGATTATTATTCCCCTTAGGCCTCTGAGTACACCTGAACCCCCCAACTCAAGCAAAACCGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827_MULTIEX2-2/2=C1-C2
Average complexity
ME(1-2[96=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.346 C2=0.613
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAACCTCGCCGGCTCTTTT
R:
TGTGCTTCTCTGAAACGTGGG
Band lengths:
245-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development