HsaEX0072635 @ hg19
Exon Skipping
Gene
ENSG00000184517 | ZFP1
Description
zinc finger protein 1 homolog (mouse) [Source:HGNC Symbol;Acc:23328]
Coordinates
chr16:75182421-75186864:+
Coord C1 exon
chr16:75182421-75182541
Coord A exon
chr16:75182799-75183165
Coord C2 exon
chr16:75186807-75186864
Length
367 bp
Sequences
Splice sites
3' ss Seq
CGCCTTCTTCTCTTTGTCAGGAG
3' ss Score
7.96
5' ss Seq
TATGTGAGC
5' ss Score
2.97
Exon sequences
Seq C1 exon
CGCCCTTCCCCCACCACCAGCGGCGAGTGGGTGACAGAGCCCCCGTCTCCGCGCGTCTTCGCCGCCCTGCGCCGTGACCCGCTGTGGCACTGGGCCACGAGTGGAGGCTGCGCCCCTCCAG
Seq A exon
GAGATGCGCCTCAGACGGGCGGCGAAGGGCTCGGGCCGCGCGGGAGCGAGTTCTGGAGCCCCGGCGGGCGCGCGCGCGCGGGACGAGGCCCCGCCGGGGCGTGGTGGGGGCGTGGCCTGACACACCTGGCCACGCCCCGATGCCCGGTGCCTCGTGGGTGGAGGAAGGACTGGAGCCTGGTCAGTTGCCGGTGGTGAAGGAGAACCGTGATCCCTTTGTCAGAGGGTCTTCAGTGAGGTGTTCCCCTGATCCTCGCATCCACCCCGTGACTTCCAGCGTTATCATCTCCGTCGCTATCCCAGGAACACGGGAGGTTCAGAAGGGGAAAGTGATTTCCCTAAGGTCTCACAACCCGGTGGTACTTTAT
Seq C2 exon
TTCTGCCTTCATAGTTCTCTGCCTTTGCCCAAAACTGCAGAAAATGAACAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184517_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)