HsaEX0072650 @ hg38
Exon Skipping
Gene
ENSG00000062370 | ZNF112
Description
zinc finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12892]
Coordinates
chr19:44336623-44343302:-
Coord C1 exon
chr19:44343254-44343302
Coord A exon
chr19:44340416-44340542
Coord C2 exon
chr19:44336623-44336718
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCATGTGTTTGGCATTGTAGGAG
3' ss Score
5.73
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTCTCTGCCTTTCTCTAGAAAAAGAAAGAGAAAAATGACCAAATTCCAG
Seq A exon
GAGATGGTGACATTCAAGGATGTTGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGTCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTTAGTAG
Seq C2 exon
CACATCAGCCCTTCAAGCCAGACCTAATATCCCAGCTGGAGAGAGAAGAAAAGCTTTTGATGGTGGAGACAGAAACCCCAAGAGATGGATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000062370-'3-16,'3-14,6-16=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.000 C2=0.346
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGCCTTTCTCTAGAAAAAGA
R:
TCCATCTCTTGGGGTTTCTGTCT
Band lengths:
138-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development