HsaEX0072665 @ hg19
Exon Skipping
Gene
ENSG00000204644 | ZFP57
Description
zinc finger protein 57 homolog (mouse) [Source:HGNC Symbol;Acc:18791]
Coordinates
chr6:29643163-29643836:-
Coord C1 exon
chr6:29643710-29643836
Coord A exon
chr6:29643428-29643587
Coord C2 exon
chr6:29643163-29643264
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCTGGTTCTATGCTTTCCAGGTG
3' ss Score
9.23
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
AAGCCAGTCACCTTTGAGGATGTGGCAGTGAATTTCACCCAGGAAGAGTGGGACTGTCTAGATGCCAGCCAGAGGGTCCTTTACCAGGATGTTATGTCGGAAACCTTTAAGAATCTAACATCTGTGG
Seq A exon
GTGTGAAAGATCTGAGTCACTAAGCTCAGTGGTAAAGAGAAGAAATGATAGCCTGCATGAAGGCAAAGATAACACTTGTAACATGATGACAGTGTTCTCAAAATATGCAAATTTTTCCATTCATCAAACAAATATTTACTAAGTCACTCCTGAGAACCAG
Seq C2 exon
CCAGAATCTTTCTGCATAAGCCAGAGCTAATCACCAAGCTTGAGCAAGAAGAGGAACAGTGGAGAGAGTTTGTCCATCTCCCAAACACAGAAGGCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204644-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTCACCTTTGAGGATGT
R:
TGAAAGGCCTTCTGTGTTTGGG
Band lengths:
226-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)