HsaEX0072702 @ hg19
Exon Skipping
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3851803-3869026:-
Coord C1 exon
chr19:3868963-3869026
Coord A exon
chr19:3855400-3855557
Coord C2 exon
chr19:3851803-3852612
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGGACTATCGCGCAGCAC
3' ss Score
3.57
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
AAGACGCCAAGATGGCGACGAGTCAGTATTTCGACTTCGCGCAGGGCGGCGGCCCGCAGTACAG
Seq A exon
CACCCTCCTGGAGGACGGGACTTTGGTCTGGTTATTCCCCGCTGCTGTGACAGCGCCCATGACAGCAGCTGGTCCCCACTAGCACCCAGGAAGTATTTATCCAATGACTCAATGAATCTGCCGCCGGATCGCCCGGGACTGCTTTCACTTTCTGTCAG
Seq C2 exon
TCCAGAAGTGGAGACCACTCCCCCGGCCCTTGCATCTGGGCTTCCTTGTGCCCTGCCTTGGACAGTTGGCTGCAGTGGAAGTGACGCTGTGACTGCCCTGTGCCCAAGCTTAAGAGGCCTTGCCTGCATCTGCTCCATCTTATGGGACCCTGCCTGGTGAAGGACCCAAGGCTGGCCTGCTGGAGGAGGAGATATAAGGAGAAGAGTCACAGTGCCCCATCCAACAGGTAGCTGCCCTCCAGGGGCAGAGAAGCCCAGCCATGGTCAGGAGAGCCACCCAGCTGAGGCCCACCTCCACCAGGATTGCCACCCAGCTGAACCCCACCTCAGCCAGGAGAGCCACCCAGCTGAGCCCCATCTGGCCAGGAGAGCCATCCAGCTGAGCCCCACCTCTGCCAGGATTGCCACCCAGCTGAGCCCCGCCTTGGCCAGGAGAGCCACCCAGCTGAGCCCCGCCTGGGCCAGAAGAGCCACCCAGCTGAGCCCCGCCTTGGCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATTTCGACTTCGCGCAGG
R:
GGGCACTGTGACTCTTCTCCT
Band lengths:
257-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)