HsaEX0072705 @ hg19
Exon Skipping
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:12869]
Coordinates
chrX:24167290-24170947:+
Coord C1 exon
chrX:24167290-24167370
Coord A exon
chrX:24169808-24169917
Coord C2 exon
chrX:24170837-24170947
Length
110 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTATTTTGAGACAGGTT
3' ss Score
3.69
5' ss Seq
ACGGTACTT
5' ss Score
6.66
Exon sequences
Seq C1 exon
AACACATTTACTGCGGGCGGGGGTCTGAGGGCCTGCAAACAACTCGAGCTGGAGCCTCGGCCAGGACCGGCGCGAGAGGCG
Seq A exon
GTTCTTGCTATATTGCCCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCCGTTCTCCCGCCTCCCACTGCCCGCCTGTCACTGCCGTCTGTTCCCTGAGCTGTGCTTTACG
Seq C2 exon
CTGGGAAAGACATAGAAGAACTATTAAGAAGATAGAATTGTTTTGCTGCGCAGTACAGCAACAGTGGATGTTCAAGATTAAGATTAGAGTCAAGTTGTGTGATTAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889-'0-10,'0-9,5-10
Average complexity
C2
Mappability confidence:
89%=80=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACATTTACTGCGGGCGG
R:
TGTCTTAATCACACAACTTGACTCT
Band lengths:
191-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)