HsaEX0072709 @ hg19
Exon Skipping
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:12869]
Coordinates
chrX:24170837-24190917:+
Coord C1 exon
chrX:24170837-24170947
Coord A exon
chrX:24179832-24179959
Coord C2 exon
chrX:24190832-24190917
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTAAAGACA
3' ss Score
7.89
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
CTGGGAAAGACATAGAAGAACTATTAAGAAGATAGAATTGTTTTGCTGCGCAGTACAGCAACAGTGGATGTTCAAGATTAAGATTAGAGTCAAGTTGTGTGATTAAGACAG
Seq A exon
ACAGTCTTCCTCTGTCATCCAGGCTGGAATGCAGTGCAGTGGTGCAAATTTGGCTCACTGCAGCCTCTGCCTTCTGTGTTCAAGTGATTCTTCTTCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAG
Seq C2 exon
GAGCTGTGACTGATGAGAATTAAAGGCCATGGATGAAGATGGGCTTGAATTACAACAAGAGCCAAACTCATTTTTTGATGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889_MULTIEX1-3/7=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.928
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAAGATAGAATTGTTTTGCTGCG
R:
AAAAATGAGTTTGGCTCTTGTTGT
Band lengths:
162-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)