HsaEX0072711 @ hg19
Exon Skipping
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:12869]
Coordinates
chrX:24190832-24197887:+
Coord C1 exon
chrX:24190832-24190917
Coord A exon
chrX:24191724-24191840
Coord C2 exon
chrX:24197300-24197887
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTGGGTTTTTTTGTTTTCAGACA
3' ss Score
7.96
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAGCTGTGACTGATGAGAATTAAAGGCCATGGATGAAGATGGGCTTGAATTACAACAAGAGCCAAACTCATTTTTTGATGCAACAG
Seq A exon
ACAGGGTCTCGTTCTGTCACCCAGGCTGGAGCACAGTGGCGCCATCTGGGTCCACTGCAACCTCCGCCTCCCAGGCTCAAGTGATCTGCTCAGCTTCCCGAGTAACTGGGGCTACAG
Seq C2 exon
GAGCTGATGGTACACACATGGATGGTGATCAAATTGTTGTGGAAGTACAAGAAACTGTTTTTGTTTCAGATGTTGTGGATTCAGACATAACTGTGCATAACTTTGTTCCTGATGACCCAGATTCAGTTGTAATCCAAGATGTTATTGAGGACGTTGTTATAGAAGATGTTCAGTGCCCAGATATCATGGAAGAAGCAGATGTGTCTGAAACGGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACTGAAGAAGTTTCTTTAGCACATTGCACAGTCCCAGATGATGTTTTAGCTTCTGACATTACTTCAGCCTCAATGTCTATGCCAGAACACGTCTTGACGGGTGATTCTATACATGTGTCTGACGTTGGACATGTTGGACATGTTGGACATGTTGAACATGTGGTTCATGATAGTGTAGTGGAAGCAGAAATTGTCACTGATCCTCTGACTACCGACGTAGTTTCAGAAGAAGTATTGGTAGCAGACTGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889_MULTIEX1-5/7=4-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.928 A=0.175 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090855=Adhes-Ig_like=WD(100=92.3),PF047048=Zfx_Zfy_act=WD(100=57.3)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGGATGAAGATGGGCTT
R:
TCTGGGCACTGAACATCTTCT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)