HsaEX0072900 @ hg19
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35734568-35761589:+
Coord C1 exon
chr1:35734568-35734686
Coord A exon
chr1:35750274-35750307
Coord C2 exon
chr1:35761528-35761589
Length
34 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTCTTACATTTCAGGAG
3' ss Score
8.64
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGTGTGGGCGGGGGCCGGGGGGCCGAGAGGTACCGCCGCCACCGCGCGGGGAGCCGCAGCGGTTCCGAGCGGGGCCCAACATGGCGGAGAGAGAGGTGGAGTCCGGCCCCCGAAAGAGG
Seq A exon
GAGGCTGGGAAGTCCAAGATCAAAGTGCCCACAG
Seq C2 exon
GAACATCGTGATCAATTAGCCACTGCCAAAGATCCCTGCTGGCCAAAACATTCTGATTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'0-3,'0-1,2-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGTACCGCCGCCAC
R:
GGCAGTGGCTAATTGATCACGA
Band lengths:
122-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)