HsaEX0072901 @ hg38
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35361619-35368354:+
Coord C1 exon
chr1:35361619-35361789
Coord A exon
chr1:35362191-35362266
Coord C2 exon
chr1:35368254-35368354
Length
76 bp
Sequences
Splice sites
3' ss Seq
TGGATTTAAATATTTTTCAGGAG
3' ss Score
7.18
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GATTCCAGCTACCCATTTGCCAATAAAGAATCCATTGGTTCGGAACTGGGGAATTCCTTTGCATCAAATATTAGAATTAAAGAAGAACCTTTGGATGATGAGTATGACAAAGCAATGGCACCACAGCAGGGACTACTAGACAAAATAAAAGATGAACCTGACAATGCTCAA
Seq A exon
GAGGGGTTAATGGACAGATCATCTTTGGAAGGGTTAATTGATTGAAGAACCAGTTCATTGGATTAGTGGATAGAAG
Seq C2 exon
ATAAAGTTTGCTGATCCCTGGAGTAAATGAATGTATTATTATAAAAATGAAACTATTTTCTTATTCTTTTAATGTGGAAATAAAACTTTGTAAGAGATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'41-30,'41-29,42-30
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=0.857 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000314607fB8037
Main Skipping Isoform:
ENST00000314607fB30571
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCATTGGTTCGGAACTGGG
R:
ACTCCAGGGATCAGCAAACTT
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development