HsaEX0072908 @ hg19
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35862153-35863146:+
Coord C1 exon
chr1:35862153-35862271
Coord A exon
chr1:35862653-35862724
Coord C2 exon
chr1:35862978-35863146
Length
72 bp
Sequences
Splice sites
3' ss Seq
TACAAATTTATTTTTCCCAGGTA
3' ss Score
7.59
5' ss Seq
AATGCAAGT
5' ss Score
0.87
Exon sequences
Seq C1 exon
AAGACACTCCAAGTCAGCCCCAGATTATTGTGGTGCCAGTTCCCGTACCAGTGTTTGTTCCCATACCTCTTCACCTTTATACTCAATATGCTCCAGTCCCATTTGGAATTCCAGTTCCA
Seq A exon
GTACTGAGTCCTTAAAGGAAACAGTTATGAGAAAATTGTGAGAAATACAAGCAAAAACAACAAAAACAAAAT
Seq C2 exon
ATGCCTGTCCCTATGCTTATTCCATCTTCAATGGATAGTGAAGATAAAGTCACAGAGAGTATTGAAGACATTAAAGAAAAGCTTCCCACACATCCATTTGAAGCTGATCTCCTTGAGATGGCAGAAATGATTGCAGAAGATGAAGAGAAGAAGACTCTATCTCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.000 C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTACCAGTGTTTGTTCCC
R:
TCAAATGGATGTGTGGGAAGCT
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)