HsaEX0072936 @ hg19
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35496148-35497569:-
Coord C1 exon
chr1:35497127-35497569
Coord A exon
chr1:35496868-35496938
Coord C2 exon
chr1:35496148-35496314
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATTGAGTTTCTTTTCTACAGGAA
3' ss Score
7.83
5' ss Seq
GAGGCAGGT
5' ss Score
1.9
Exon sequences
Seq C1 exon
GAGGGCGGAGACCAAGGCTGCGCAGGCGTGGTTGGCCGGTCGTTGCGTTGGGATGGATCAGGCGGAATTCCAGAAGAGAAAATAATCCCTGTCTAGATGCAGAGGACTTGGTTCCTATTCCAGTGCTCCTCCGGTAGCAGGGAGGCGACAGAAGGTGGGTGCGGCCGCAGTGGTAGTGGGCGGGACGGCGGGGCGGAGGCCACACCACGTGACGAGGCGTTGCGGCGGGGGCGGTGCCAGGTGGGCTACGCGGCTGGGGCGGCTGCGGATATCGCCTTAGGGACGCGTTGACATTCACTGGCTAGTCCACCGCTCTCAGTCGGAGACCACATTGCCTCGTTAGTCCTCAATGATGGGAGTGGGAATTCTTGGTGGGAAGGAGAATTTCGGAAAGCGTGCGGTTCTCAGAGGAGGGATGAGCGCCCGTAGATATTTTGTGGCGA
Seq A exon
GAAGGCGATTGTGAAGCGGGGCTCTGAGGGGCTTGATGCCCCCCACCCCTCACACGGAGACCTTGAAAGAG
Seq C2 exon
GTGTCCAACTATCCATTACCAAGAAGAAATCTATTCGTTTGAGCCTGAGACACTCTTTGAGGTAAAAAATTAGAATGAAAGAACCTTTGGATGGTGAATGTGGCAAAGCAGTGGTACCACAGCAGGAGCTTCTGGACAAAATTAAAGAAGAACCAGACAATGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.201
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATTTCGGAAAGCGTGCG
R:
ACTGCTTTGCCACATTCACCA
Band lengths:
176-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)