HsaEX0072991 @ hg19
Exon Skipping
Gene
ENSG00000090612 | ZNF10
Description
zinc finger protein 268 [Source:HGNC Symbol;Acc:13061]
Coordinates
chr12:133768494-133781730:+
Coord C1 exon
chr12:133768494-133768589
Coord A exon
chr12:133770014-133770119
Coord C2 exon
chr12:133778730-133781730
Length
106 bp
Sequences
Splice sites
3' ss Seq
CAGAAATTTATTTCTCACAGTTT
3' ss Score
4.63
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGTACCAACACACCAAACCTGATATCATCTTCAAGTTGGAACAAGGAGAAGAGCTGTGTATGGTGCAGGCCCAAGTTCCAAATCAGACCTGTCCAA
Seq A exon
TTTTGAAGGCTGGAAAGTCCAAAGCCAAGGTGCTGGCAGGTTTGGTGTCTGGTGAGGGCCTGCTCTGTGCTTCCAAGATGACGCCTTGTTGCTGCATCCTCTGGAG
Seq C2 exon
ACACAGTCTGGAAAATTGATGATCTTATGGATTGGCATCAGGAAAATAAAGACAAGCTGGGAAGTACGGCAAAAAGCTTTGAATGCACTACATTTGGAAAACTATGTCTTCTTAGTACAAAGTATCTTTCAAGACAAAAACCTCATAAATGTGGCACGCATGGAAAGAGTTTGAAATATATAGATTTCACTAGTGATTATGCTAGAAATAATCCTAATGGGTTTCAGGTACATGGAAAATCATTCTTCCATTCTAAACATGAGCAAACTGTTATTGGAATAAAATACTGTGAAAGTATTGAATCTGGAAAAACCGTCAATAAGAAATCGCAACTTATGTGCCAACAAATGTATATGGGCGAAAAACCCTTTGGATGCAGCTGTTGTGAGAAAGCCTTCAGCAGCAAGTCATACCTTCTAGTGCATCAGCAAACTCATGCCGAAGAGAAACCCTATGGTTGTAATGAATGTGGGAAAGACTTCAGTAGTAAATCATACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090612_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF079757=C1_4=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF079757=C1_4=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=2.9)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCAACACACCAAACCTGA
R:
TGCGTGCCACATTTATGAGGT
Band lengths:
256-362
Functional annotations
There are 1 annotated functions for this event
PMID: 16865230
This event
mRNA: ZNF268a (skipping exon 6), ZNF268b (all in), ZNF268c (4,6), ZNF268d (3,4,6), ZNF268e (4,5,6), ZNF268f (3,4), ZNF268g (3). Subcellular localization analysis showed that ZNF268a and ZNF268b2 distributed diffusely throughout the cell, while ZNF268b1 mainly localized in the cytoplasm. Moreover, using a CAT reporter system fused to the Gal4 DNA binding domain of the ZNF268 gene, the ZNF268a and b2 activated the CAT reporter gene expression, while the KRAB domain, corresponding to the ZNF268b1 repressed the reporter gene expression. mRNA: ZNF268a (skipping exon 6 = HsaEX0072991), ZNF268b (all in), ZNF268c (4,6), ZNF268d (3,4,6), ZNF268e (4,5,6), ZNF268f (3,4), ZNF268g (3). Protein: ZNF268a, ZNF268b1 (PTC in last exon), ZNF268b2 (from internal ATG in exon 7, derived from isoforms c-g). Exon 3 =HsaEX0072986, Exon 4 = HsaEX0072989, Exon 5 = HsaEX0072990, Exon 6 = HsaEX0072991.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)